Scaffold Ga0116128_1000365

Overview

Basic Information

• Taxon OID: 3300009518
• Scaffold ID: Ga0116128_1000365
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25501
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044300	Metagenome / Metatranscriptome	154	Y
F077906	Metagenome / Metatranscriptome	117	N
F085999	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116128_100036511	F085999	N/A	VLALATLCFAPRAGATTGDFYPSYLQAKVIGHLPLSGGVRQMFLQQEGRRQYLYLQQSSQQGFTVIDITKPDRPKVVNRVPQETLTVVGSGLAVAETPDNPATMGTSHGDEKPEGARAGGRSVPELVRVLDVSDPAHPRTAQTFDGVTSILQDAGRNLIYIANGNGVWVVSHQRVLRRHECSSSDDMSPMPNCD*
Ga0116128_100036516	F044300	GAG	MTCRRFFFVVTLLLAATASAWSKDLPLQIKVLSAESYQFQGPPLAPPDCNWRDISAYCYSSSPQTYVENTMVVQEPDGNSLEIACTVYNRWSHCTSLPVNQSFKAWMGKRGLEIRYMDQHGKMRKQVYEIPRHHGKEAS*
Ga0116128_100036523	F077906	N/A	MIGSRRRTATFLSGIVLTLVAVVFLASAATAEEPAKVIAHITLPGTAVRQMFLQQHDGKQYLYLQQRAHFTVVDVTDPKSPTIVERVASRGSLSSIQSGLALTVVPEKGSTSQQPSTVATQVVNVMDLSDPKHPRTIRTFSGVTSILPDDTRKLIFIANNEGLSVLSHKQPYHLPLCTSEDAMEPDPECQ*