Scaffold Ga0116128_1000019

Overview

Basic Information

• Taxon OID: 3300009518
• Scaffold ID: Ga0116128_1000019
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 147666
• Total Scaffold Genes: 151
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 106 (70.20%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000552	Metagenome / Metatranscriptome	1033	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000775	Metagenome / Metatranscriptome	896	Y
F000885	Metagenome / Metatranscriptome	849	Y
F005283	Metagenome / Metatranscriptome	406	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F015120	Metagenome / Metatranscriptome	257	Y
F059669	Metagenome	133	Y
F062060	Metagenome / Metatranscriptome	131	Y
F076450	Metagenome	118	N
F079694	Metagenome / Metatranscriptome	115	N
F098497	Metagenome / Metatranscriptome	103	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116128_1000019100	F059669	AGGAGG	VNPYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEETASAPAPPENKGRRASDNFLGDRIVPPRASRVRT*
Ga0116128_1000019108	F005283	N/A	MVEVTQLQMQTLERLFAAGFRPIAIPPYESALCVHRGECAAVLAPVENGGLRLLAPATVMVDGNLSVRLKRAAGDVFVWKKKEVAATAERLKELEAFRAELVGILEMRGMQ*
Ga0116128_100001936	F098497	N/A	MTSPLSLPCDGCGQPASPTHLAQRLQRLEWTTRYRSVHIQALLLGGIAPEADAAFLYCPEGNYQGEAANLLDALRISRAGRSADAILTEFQKRGLFLTHVLECPLEPGTTPSAAQQFLEKQLPFVIARIRRSLKPKRLVLFSRELAAVAEKFTQASLGSRVFTGPYGPLALDGVPSESEMEEFRRALPTGSVP*
Ga0116128_100001945	F000775	GGAGG	MKNLNSVFEAYLIGWGVFFLFYVSIAKRTSDLRAEVERLKNALPRGK*
Ga0116128_100001958	F062060	GAGG	MNPAFDILKKIGAVNFEWVEAVRDLQTAEARIQELQARSPGEYVVFSQRTQEIVGRFNSPKAGAGET*
Ga0116128_100001959	F000552	AGG	MGAMRRKLVWVEKQNFQGWACTECAWAFNPSGPLVGGSIVEMMAIYKRQRDKEFTSHVCAKHPRVTKKSPLTKSLAG*
Ga0116128_100001966	F009917	AGGGGG	MFSISSAILLAVVSIGAQFVVFLRWIHRRMRDDEINRVFLRDLALRHLPCIYRALYRMAERQGIALDEMPIVNFVDLQNGGRRS*
Ga0116128_100001968	F007488	GAG	MPLRIREYDEGDVEALQAIHAAQGFPYEFPDLRNPLFLTKLVLAGDETDAAEGKGIAGAALLRLTAEAYLLLDPKCGTPKERWQWLLGLHEATRRQAWERGLEDVHAWLPPEIAAKFGRRLTRLGWVRDDEWTPFCKRLK*
Ga0116128_100001970	F106044	AGGAG	MPNTIHNATWDFSPGDTVTLSATFTFDLNDPSDGQNVANVLTTLQGRTPHVTLAQTDNGTITVTVTI*
Ga0116128_100001978	F000739	N/A	MSGRISHLRIWLKGIMAAGISGAAGGVMTGLAAVGIDPAHFNLQAGMGATVRIGMAAALINAVIGVAAYLQKSPLPDE*
Ga0116128_100001983	F015120	AGG	MLELVKRFFKTRYVALLEEETARLRGENRALLNSLLGTAGFPPVEFAEPVKPVELPRLRKRSWQQVQRKNELEAMKG*
Ga0116128_100001985	F000885	AGGAG	MTNAKVIFIGEVTQIAGVGAVVLGVVLSLHHWGAAAALIGGISAFFVGKKLRGV*
Ga0116128_100001991	F076450	N/A	MVLSVGVTSASLQLNPSRHYRLWGSVDMFFQFGPTGVTATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISEIDAQGV*
Ga0116128_100001992	F079694	AGGAG	MPTYQNATPPNALYPGDVGYSWNNEAFPGANTSGTQFALSTPGGYAPETGFTVRWQTIFGGAPSAISIKLQGAMADVDAEYQDMDASTQVAGEARQVTGVQAKFLRIKLYSSTGGSGLTAKILV*
Ga0116128_100001997	F000188	AGG	LAEVEEEERRRAEEKMSVKPEMAFDVCWEVYRGAREVLEAKRGITALAFEADTKYSWRPDLRPKLKDWVADFALAGQAALEGPQQASRMVLFRLYYLGLTPYESARHFLGLSERSWVNWSEEIRRRCGEELLRRALFPPRKYFGGA*