Scaffold Ga0115003_10076560

Overview

Basic Information

• Taxon OID: 3300009512
• Scaffold ID: Ga0115003_10076560
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2084
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_100765602	F005243	N/A	MAELNLDPNKDPQLSKEELAARREEITTFYKDNIPHLTVQAEYEDLLATIEKARAERMQAQMYLAQAYAASKEGENASPDSEDAKAFKDAMEKAASNIE*
Ga0115003_100765605	F004866	GAG	MAIVNKIDLKLKVNLDTCVMYQIMTYCFFKEIVISNSDLKFLMYLSKNDNIELTKFCIKLVNGNIFKSPQSARNAITKAEKKGLLNKSGINKKTITINKDMNIQKDGLVLLDYKILGNESKEV*
Ga0115003_100765606	F006666	N/A	MNPKKYKEFKKNIAEEVGVHQSVVDDFIAFYYSKLRKHLSNLEFPRIQVDGLGTFVLRKSKLDKAIKKNKSMLGNIAKRTYNGFAKSEDIQLNIDNM