Scaffold Ga0115003_10021396

Overview

Basic Information

• Taxon OID: 3300009512
• Scaffold ID: Ga0115003_10021396
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4308
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F039679	Metagenome	163	Y
F059455	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115003_1002139611	F039679	AGAAGG	MSAKNSHLTIRSDLLEEDADISVPVRFLDYQEDDYVGDSSTLNIDCEYSTDGEQLDDMAGYNIIVKITDSSKKDKYNNPWKDRLAFAISADFDWN*
Ga0115003_1002139613	F007770	N/A	MSGEGLTTSFRRTKATTKSNKQLLREFQNIIYASRVTTHMKWYGEAESVQLIEHGDEELPKFQQEYVDIKDTFQFYISVRESWYEDADLYESHEVEDSFASLARKFANDNALMYFPEGFPAEWIEQEIIDGEKNWNHFNVKPDDKNIDKICDVWYRYGIMKLQAFDKKVESELWQDAKTEIKQLMEHKYEK*
Ga0115003_100213964	F059455	GAGG	MNNKIEKQIVWSKGKKQGEMAKQTSWSSSKDWSGLSGLEVKCYDFSTFVACTAITSQGRSNNKYFQIPVDKIEEFCHTLMDAKKLMETKNGN*