Scaffold Ga0115572_10030464

Overview

Basic Information

• Taxon OID: 3300009507
• Scaffold ID: Ga0115572_10030464
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3601
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030435	Metagenome / Metatranscriptome	185	Y
F053299	Metagenome / Metatranscriptome	141	N
F059965	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115572_100304644	F030435	N/A	MNNKDILDMCRRLASRYYNHQDYDDIVSEGVVLCLNMRAEGIKEPSKLYYSARTAMFQYVNVSMSNFSYPKGMAGREAVLEDTIEYVVSDDVDIPSEDLYGSYELKNSIENLKKFLTDREWKVFMILYNNNNNLTDTAEVLKLSKQRVEQIRNKIRDKLVTICELDI*
Ga0115572_100304645	F053299	GGAG	MKNYKPYYRTDKMKQEELRIAKYVSILFFTMVAFSFIGFSFVLVKAMLYMTGLFL*
Ga0115572_100304648	F059965	GGA	MPIPPSMEMELIELGILKSDTEELESIAEQTGFYALRAETIAWHNTLIVDGEVMF*