NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115564_10476447

Scaffold Ga0115564_10476447


Overview

Basic Information
Taxon OID3300009505 Open in IMG/M
Scaffold IDGa0115564_10476447 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110523
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045382Metagenome / Metatranscriptome153N
F099402Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0115564_104764471F099402N/ALLITTLSHAEEFKLLCEGEQLLTKSNSDTFRIKKSIAVKVRKASIRAEDETYYNGKSARFEGSYIKDKDSISAMTVYTETPSKNSCSVVG
Ga0115564_104764472F045382GGAMKKLLAMLVLAVLVTGCILVEKEAHKECDKAGENCESVSENEVNSD*

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