Scaffold Ga0114951_10011139

Overview

Basic Information

• Taxon OID: 3300009502
• Scaffold ID: Ga0114951_10011139
• Source Dataset Name: Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6921
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.2
  • Long. (^o): 25.1
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_1001113910	F026556	GGAGG	MTSALIKLLFGIALILIAVIFGPIVGIWSLNTLFPVLHIELSWQTWLAFNCLFGGTIASRIKS*
Ga0114951_1001113912	F009462	AGGAG	MLHESVRNSYTETVIKEHEGFRLVLKKHEVLSPKGLFSIDMEQQSLKDGEIVDSNVYNYFMTKEEMGQPH*
Ga0114951_100111395	F033308	AGGA	LEDLIAVTKTAQQLSDELIYRMKTTSLNKFEIKREVGDNWLPHGTIPFDLYASKGIATFIVWAESIQDAEDQVSQFLERDDNE*
Ga0114951_100111398	F070810	N/A	METVKVVWEIVIPWHNQDNNWWNETCASVVEVFGLPGDRYTYHPRYEDMRFLFTSKKDYHLCKILLSDKV*