Scaffold Ga0114951_10008479

Overview

Basic Information

• Taxon OID: 3300009502
• Scaffold ID: Ga0114951_10008479
• Source Dataset Name: Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8419
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.2
  • Long. (^o): 25.1
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005705	Metagenome / Metatranscriptome	392	Y
F052344	Metagenome / Metatranscriptome	142	Y
F091205	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_1000847913	F052344	N/A	MAFLQYEVWGVTDQHEELIDAVPTLKEAEEIALAEREFCNEVYIMKDTDDDLKEVRRYQGL*
Ga0114951_1000847918	F091205	AGGAG	MKTTTQLKDMQGNILQVGDRVAMHSYHNLGLAIGIVEKLGRVRAQVRPIQTRFFKTDPTVESIGGGGLIKL*
Ga0114951_100084795	F005705	AGGAG	MKIIIKVKPKHREHFVLFAQNTPFKQKVVESKVLYRRNKKHKGRDYE*