Scaffold Ga0116229_10023283

Overview

Basic Information

• Taxon OID: 3300009500
• Scaffold ID: Ga0116229_10023283
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7537
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Dicranidae → Pseudoditrichales → Ditrichaceae → Ceratodon → Ceratodon purpureus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018305	Metagenome	235	Y
F022136	Metagenome / Metatranscriptome	215	Y
F100223	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116229_100232831	F100223	N/A	VTLCEHATSHMRVLPCNIYNTRLTKANAVSHPRLVLHRIENGLGNSVKQLKDWHEIMFNHTNVRIKQCRE*
Ga0116229_100232834	F018305	AGG	MDKVPIYLCYWHVLKAWCLRGTEKIKDVEVRGGILQDFHDVMYMSINHGETIDNFKEHGRVHVQENLHKHRPGHVWTNYFWTYYHQFRK*
Ga0116229_100232836	F022136	N/A	MGFSDIVGLKYNSGIAYVNIFNDGRFNNSMWVLPKFVLIYGFIMQVLYVMYIGTIGILYHDMGIVMGIPIHNIDFKGAMYVLHFGFLLNDECL*