Scaffold Ga0115569_10009408

Overview

Basic Information

• Taxon OID: 3300009497
• Scaffold ID: Ga0115569_10009408
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6529
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC716 virus 3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098661	Metagenome / Metatranscriptome	103	N
F099872	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115569_100094082	F099872	GAG	MSSSLAGLVYYLQDPEPATPTSGDDDIPQTQTKTYRKNMEIMYSTDCDETSNVSATEGTIDTSFGKSIKWTAPNIESTGTLKSGTDEKIKKLHLRNVVISTGSYKQHDENTDSEPVTVQVTDEKYCGLKLIDLCDDDKKYITDLDITYKPMEDDGKIEYKPSYASLWANKCVTDDPDSKQVQDATISGVCSTDNLDLKFNNDYESEDRSEEFKKSTLMEIENLKLVSGSYKRVKSDGTEEDVTMESKTYSGKHTINFCGEDGTEWAKDLKVDFEAIPESSTETYKIEGYRI*
Ga0115569_100094083	F098661	N/A	MSKGLLLGGGALMLCILLIIFIAIIYFLTRPEKETEKETDESPTITDAGVDLVLNPGKETDKVEEYRIFKTEYALGEASAKNIDIKLKWTNGPTFTSVTSLIFVHELGTKKVRDNVTTTDNIESNASNELLFKGTDLTSEEVVGSNTIKIYWDEVKESNILKTISFTITQEHLDTPFNLTSVKNITIPVQLSSSQTASGDVVSTYTNYYILPYFTDTPVYNRKVQGDNNDGFNIIKNGSKQSIDGVDKFYIVQAIGKQFLSKDPDGNSLLRYDKKFKNQNEIFGNMNAVVKSAISVREAKPFKYEFIVKHLDYLATQPQHDIAAHIYNVKLYDFNYTLIKTITNNDIEFDVQPTHSLNRDDYLGAWKSNKYNVGDKLFTITSDKPVHMMKIQYVRPRYAPGWTIKENGIVRFEDTRNHGTEENPTPVDYRYTLSKFDDIGDLSYSGYYDISEMEDIGLEYGLMAPNNIHDWQYDINTYEDCRQRAGEKGYNAFGFQATGTKHCWLRQVPGTGGYTVTGLQSTGEGGKKDGHVSGCALKGRKVSNNCQQIFHYGGDSNLGRDGRNACNMTDNDKKYACDNDTELFGIGSGPSCGHKFYNTDKGKGSTISSTDEYDKFYSCETKNYV*