NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115570_10157875

Scaffold Ga0115570_10157875


Overview

Basic Information
Taxon OID3300009496 Open in IMG/M
Scaffold IDGa0115570_10157875 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120524
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1054
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103047Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0115570_101578751F103047N/AMKKLLFLLLPLFCLAQDLKLDHSYTNAADFEVGDTITIKFNTIQVTEGADPNLYMFDYEYNNKLLQKITHRFKVTDNEANTSAQTSLTHWDGYKFKILSTYDEDNLSAQYLHGWQNRTQVEGDTNSYPTDNDWSVERITIQDGVGITYNNTLIEVDFKIKDKINTNYSNYSNVTHLNWMKAHNNSDNTAYDVDAMQQKITLASVEGGDAGSVTINLKTENDKPTHYKYNILSNNSSVASGNFDANSQAIVTGLENDVKYTIDITVDNDAASDWLDDVVTVTDVFLVFKEAIKAGSSPGGQANTFTHSIQFLLGEVNNSGNVDFDDSYI
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