Scaffold Ga0115571_1110438

Overview

Basic Information

• Taxon OID: 3300009495
• Scaffold ID: Ga0115571_1110438
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1183
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020816	Metagenome / Metatranscriptome	222	N
F035272	Metagenome / Metatranscriptome	172	N
F046985	Metagenome	150	N
F052274	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_11104381	F035272	N/A	VRKRITYKQWCKLRELLTTLSDEVDSKVCDVKVSEAFDDVWDMVDEIDTTQEIT*
Ga0115571_11104384	F020816	AGGAG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWDVYKDDLRITNVKVWEEDDDS*
Ga0115571_11104385	F046985	GGAGG	MIVDTKEELNEWWLEEFGIDVDASKYVEIRVPAKTYAMLVQIGIFNIHGKGISDWARKVGVEAINIRTDFSVNMLLRDFQAVKMAVMLREYPFDRGYLQQADKIWRNILQHLRAFNPVYAEELKSKLFKRRVA*
Ga0115571_11104386	F052274	AGGAG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEI