NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115571_1006972

Scaffold Ga0115571_1006972


Overview

Basic Information
Taxon OID3300009495 Open in IMG/M
Scaffold IDGa0115571_1006972 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6562
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081343Metagenome114Y
F100470Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0115571_100697216F100470N/AMSNMFEVDDDAVRTLVALAKEGESVDPINWGNLNISEDEAYVLMATHVLGMDRNKLIDGSIIVKLLVENFVL
Ga0115571_10069727F081343AGGAMNNHAQKINDLYDVSESNFVTLQERLEKAIAKSPQFKAQLEAVVDEFRRRNCSPPTERGWTGFEQIKLCTAIQVSMDCILIDETMQRELNMRHILKILSYFSESMVMAVQVYEDPSRPGKYIAWDGQHTSIALFIILTKVFGERVAKAMVPVVVYSSHQKLEIRRNFILLNGDAKESLDFIDTYKQMVFGVKVDGSTDPEWLDTALKNDYFKAAGLFATNAKFGDEDKPGAFTLLADTLMSKSLKTRKHPEVTRMFADYWAYLNEERPVRAKEARQLYEYFNLCYEQGITVDQQYLLEMVAFTKEYFEANFGENGSFWDKVKMSYTRWYENANPDSYAEHGLKGFSTEMRTGIPFLIAQMKASTKLKTPTYTPNNGYTVIKQDLWK*
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