Basic Information | |
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Taxon OID | 3300009495 Open in IMG/M |
Scaffold ID | Ga0115571_1003183 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10467 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (26.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F027845 | Metagenome / Metatranscriptome | 193 | Y |
F039638 | Metagenome / Metatranscriptome | 163 | Y |
F103244 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115571_100318313 | F039638 | N/A | MIIKQALELLAGSDWLVADKDIQIAKGLYELPTTFAELRMNNKRKKLAR* |
Ga0115571_10031835 | F103244 | N/A | MRVEDLTSYENDKSKVTVFMETDTDGSYHFLKHIEEKGSDNEQLIRYSLEMFMAEYYLIEKFIKDNLVEDRKFFKSVMNLKASRNE* |
Ga0115571_10031836 | F027845 | AGAAG | MTQAEIIELVRDIYPEVDHEGVDIVYDNGNYDVDVRFTSWDCLFTIEIYSKSSEIPLELTSRTMTELFDYTVDLHTEYMRDLVNLEETRDYLDIYER* |
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