Scaffold Ga0114925_10435666

Overview

Basic Information

• Taxon OID: 3300009488
• Scaffold ID: Ga0114925_10435666
• Source Dataset Name: Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 910
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: near North Sumatra
• Coordinates
  • Lat. (^o): 1.759
  • Long. (^o): 96.774
  • Depth (m): 1855

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004912	Metagenome / Metatranscriptome	419	N
F021417	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114925_104356661	F021417	N/A	TTEYSRGANRENFGDATSEVATLDFNKIRRFDIEDGDSPNVVIEGTGWMCKQGACQDIVKIGISAPRQEEARAIESKRHAIDFIKKACPALPRDR*
Ga0114925_104356662	F004912	GGCGG	VTPTSVVFAEDPSPTVGKYSCSVGNIVGLQTNSQTGTRFAGRIDADVQQKFFVTIEENKQLPEDRCFSADALDELKKLRRGEKPGTNSKANFLDPLMFFTACQAQFRLSTNGSPIDSLYHSDNLNIFRDEFSQFWIKNGLSYIWQFHDLKGNAYVAEGKCEKIN*