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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009481 Open in IMG/M |
| Scaffold ID | Ga0114932_10075165 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2125 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kolumbo volcano, Aegean Sea | |||||||
| Coordinates | Lat. (o) | 36.5264 | Long. (o) | 25.4868 | Alt. (m) | Depth (m) | 470 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017147 | Metagenome / Metatranscriptome | 242 | N |
| F020191 | Metagenome / Metatranscriptome | 225 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114932_100751651 | F020191 | N/A | MSNNVIKNVYQNSLYQKILHEINGVIFPLSDQWKRIGISVSGGLDSALMSVLLCSIITQNLWLTKVHIITNIRCWKTRPWQRQNSLDVYNWLVKSFPNIEFKRHENFIAPDLEWGSKGPNIVDEYGKLKSGNQIELRSHAEYVAHTEKLDAWYCGVTQNPDKEFDERLADRDVFIDSLGDKTLDRLIKPHMGGYACHPFTYVKKDWIVAQYKKLGIMDLFSLTRSCEGDNETYPEVFGDLDYKTYVPGTPVPVCGKCFWCK |
| Ga0114932_100751653 | F017147 | GAG | MPKWKNFYKFKGGLAVTNLLYEPLVSKDKKIFCMNWNRNEYHDNEFMTEELYNFWFNQELKYLLHLSNKKYIPEILLIDTKKRVIEFRWYDKNLNVMIENNTINKVKNWQKKIKAIKDDLEKDNIFKINMYPHTFFFDDEGNAHIMDLYGCTDKHTRYLDTKYLKPLIRNKRFDKFIINERLDTHKLYQETIKTNYAEWPGDFL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |