Basic Information | |
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Taxon OID | 3300009480 Open in IMG/M |
Scaffold ID | Ga0127405_1019239 Open in IMG/M |
Source Dataset Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 10m depth; DNA IDBA-UD |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Marine Biological Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1784 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
Source Dataset Sampling Location | ||||||||
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Location Name | Falmouth, Massachusetts | |||||||
Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010152 | Metagenome / Metatranscriptome | 307 | Y |
F074976 | Metagenome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0127405_10192393 | F074976 | N/A | MSIYGHYTQQYYGNKIIFPEKSFLVSGISFYKNNCLDITYETELTMELEPDNEYDKSAISIKNNNKKIGYVPNSQIKELCKENITEPLKIINIKLINGNYGIRVILKCFYVYDKILESKVFFSDD* |
Ga0127405_10192394 | F010152 | N/A | MGIYSSGNIFGIRIYNFNDDDISNILFEQKYDEVMSFIQMKEAYLFYTNLNDKNELRFQYYTECSSTLSYGMENFMMWQPLLLSTFLEKFGV* |
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