NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115555_1041038

Scaffold Ga0115555_1041038


Overview

Basic Information
Taxon OID3300009476 Open in IMG/M
Scaffold IDGa0115555_1041038 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110407
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2135
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium BACL1 MAG-120619-bin26(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072762Metagenome121Y
F090890Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0115555_10410383F072762AGGAMDEFMGFSMLVVIMACMAWIWRKLKDIETQLNERDLVQQKHNKDIESYLSSLSQEAVNREWERKNKD*
Ga0115555_10410384F090890AGGAMSIWWNKYKFLVILVVFACFTYLFSDNQTANEGGKILDDETFAEIQECITRNKIGFSKEIFEEGAEEQMIKDDIDRATQQVIALCTDFGKETE*

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