NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115554_1020191

Scaffold Ga0115554_1020191


Overview

Basic Information
Taxon OID3300009472 Open in IMG/M
Scaffold IDGa0115554_1020191 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110404
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3476
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030927Metagenome184Y
F099538Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0115554_10201911F099538N/AHGNFEDVQDYVQNEEQGDTTTWKKIKNKTTTEEDYHLRMEQRIEDLMAKVEAGETKLEDLTAEDRQVIMDIRNQNEI*
Ga0115554_10201912F030927GAGMGLNLKMFDTLGALTVVTPPSMMNPEKLSFTIINLREKEKNHFAKALNTLFPNDNITVYLYDHPGYQEWLEQAITKSKYIIMEKTKAPIWIQEMAPEEKTYYVSEEQTIEKTFEIINKKESEA*

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