Scaffold Ga0114939_10000209

Overview

Basic Information

• Taxon OID: 3300009455
• Scaffold ID: Ga0114939_10000209
• Source Dataset Name: Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50671
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (67.27%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Ash Meadows Crystal Spring, Nevada
• Coordinates
  • Lat. (^o): 36.42
  • Long. (^o): -116.32
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043479	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114939_100002099	F043479	GGAGG	MMRTAPMVRLALTLLAGVLPISTLTLSTGTSWAEDAPTTVKIKKWKLDPVELLDQPDGKVVASKSAADLPMEAIRAGQGWLKVKIDGKDYFVEASQARTDLKLTDKPKCEQLEGATGYAASRGVGEDGCVK*