Scaffold Ga0114945_10009187

Overview

Basic Information

• Taxon OID: 3300009444
• Scaffold ID: Ga0114945_10009187
• Source Dataset Name: Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5308
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Beatty, NV
• Coordinates
  • Lat. (^o): 36.96
  • Long. (^o): -116.72
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013869	Metagenome / Metatranscriptome	267	Y
F021438	Metagenome / Metatranscriptome	219	Y
F046231	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114945_100091874	F013869	GGGGG	MTIEKVLAVYKTSPIVLVVESAEGTVLELSLTDLHEAGHRLSDDACTSLSEVYQMFTCQSVAG*
Ga0114945_100091876	F021438	AGGAGG	MSTAETPTQLRLTRDLLERADALIEVMAADPEVRALGMPTRTAVLRLAIARGLKDLERQYQPQTPAHAAPPHPTTATNASTRRPREGTLSHVYAGRDGEGHEEGSPRDR*
Ga0114945_100091877	F046231	AGGA	MRRGGALAERICMKTGRSQPSIVIDAQELVAHGDRVACMEREMGNPPRVIHGPDVCYLFHARDQEVLPGFVERWHSLGIEAQVVVIQPTGGEEAHARISVRDW*