Scaffold Ga0115008_10257244

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10257244
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1242
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059372	Metagenome / Metatranscriptome	134	Y
F096046	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_102572443	F059372	GAG	MSDEDIQGFIDYFGEDKIPNPDQYPKKVEWLMKWYIHIVLKNRKDDEKKNSE*
Ga0115008_102572444	F096046	AGGA	MKKRTANDYIRELQTSQPKPKCSICNDEYDETCGGIQGLFGVMPVTFCEWCYSSIYDMVEQDIRDNVREEMAEEDREDIKTVLNTVGIDYEIVEKAYRTKQRFFNVRFDEPCGMSHK*