Scaffold Ga0115008

Basic Information
Taxon OID	3300009436 Open in IMG/M
Scaffold ID	Ga0115008_10054528 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009436 Open in IMG/M

Scaffold ID

Ga0115008_10054528 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3084
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3084

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	69.2303	Long. (^o)	7.7302	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Fram Strait

Coordinates

Lat. (^o)

69.2303

Long. (^o)

7.7302

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028965	Metagenome / Metatranscriptome	190	Y
F031061	Metagenome / Metatranscriptome	183	N
F071268	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_100545281	F028965	N/A	YDFFADLDYVCVSAIRRPANAEQRGLWFGKDIGMKHRQIKKYMDRLFVPREVHEATDYGAMAQADNTFGNLFD*
Ga0115008_100545282	F071268	GAGG	MRNYHEDLLDEFGDDLERIFGPTEERTKGLTSLAGQPDGDLKTLLKGLKTKVIDCSGFMPKRQPFLNVVKEVLRVMRDSVDASTGKSIFYGYNLPVFVEQERVQGADEFAWEDVYIDYNVQRNIDVAHIIKDILIEWDTKLCDPAHGRKQSDGTIDINDSQHATCSRALVGAGVCPATYIISDSKSDNANQFGARNISNKTTEWFDDYKVRVYRAQEMEKDGFPAKAGDAPYLNMFNELAEFEAFAIATQGTSKSAGSCNRADKLFDYRGQYGEDIFKRAIRTVRTAWGNGELCHATVWGIATLMWYYKKNHNFAAGEMRKLETELVNAIQAYYPDKANTPNRASGKDALWPQVRKLIGKTYPKDADDFRGRQESFPFMIASALRGMILNYDYYRTHPEGLSSKSLLKLDLPAVVRENGTTTEYAINHVLIQDNRIWDRLDVEEYNQQDFDDADFAFEDEDEAVTV*
Ga0115008_100545283	F031061	GAGG	MKQSQYKELLSKIGEVLSVLPDTIPVADKDLMEQQILDKKHQIEYDSASHGGSQKLHEHFLKNRDLKWIWCHSGNRYGVDPKELYEQAPDRCPVFGTLLDYGLGKNIATTHPAFRPSMDHIEQQSRGGVKREDISNFEVMSIQANTYRNNATNMHQLYLLKYELTKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115008_10054528

Overview

Ecosystem & Geography

Associated Families

Sequences