Scaffold Ga0115008_10043187

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10043187
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3528
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_100431874	F006666	N/A	VNPKSHREFKKDIADEVGVHPSVVDDFITFYYAKVRKKLSTLAYPRINIDGLGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAKSEDIQNNIVQMETAMLQLEQDIIRKKKFKNVKE*
Ga0115008_100431875	F004866	GAG	MAIVNKVDLKHQVDINVSIKYQIVTYCFFNNTLISNSDLKFLTELAKVQEIELTKFCLDAVGRGIFKSSQSARNAITKAEKKNLLLKKGHNKKTISLNPDINVQSNGLVLLDYKILGRESEES*
Ga0115008_100431877	F005243	N/A	MSNSKTNPNLQDTDPKMSKEEMAARREEITEFYKENIPHLEIQADYEGLLAAIEKSRAERMQAQMFMAQQYASQKGEGQPDPNTEEGKAFQDAMVKAMQGESA*