Basic Information | |
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Taxon OID | 3300009436 Open in IMG/M |
Scaffold ID | Ga0115008_10004512 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11567 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (36.84%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F081877 | Metagenome / Metatranscriptome | 114 | N |
F101085 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0115008_100045121 | F101085 | GAG | MSGSFTQHNNDEKPQGSSMVNIINRLLGKIFLKKPVFFGVDEHKITLIVSPSMKIYGVYTSPKRLLSKFPFEEKKFLNIRDLKLWAEDNEFKITFSAETPKLRRELLILLGDVMVESKGDKEKELSIVVMQELKKSKLPESIKEWAKENPEKFIKNIRHVQNILKK* |
Ga0115008_1000451216 | F081877 | N/A | MNTKKDMEFKSEEEFRGVAKRAVQILLYVVESKSPLLRKLRAKNFISNIYGANQNGTVYFEVEVPFTVTDPDHGPLCQELDKVLSAVINAFGDYHLNENMEFVTKTEEGDDMVGFLNSCSFDWTNHEDEYNAKANYGFEYNWSSMG* |
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