Scaffold Ga0115008_10004512

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10004512
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11567
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081877	Metagenome / Metatranscriptome	114	N
F101085	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_100045121	F101085	GAG	MSGSFTQHNNDEKPQGSSMVNIINRLLGKIFLKKPVFFGVDEHKITLIVSPSMKIYGVYTSPKRLLSKFPFEEKKFLNIRDLKLWAEDNEFKITFSAETPKLRRELLILLGDVMVESKGDKEKELSIVVMQELKKSKLPESIKEWAKENPEKFIKNIRHVQNILKK*
Ga0115008_1000451216	F081877	N/A	MNTKKDMEFKSEEEFRGVAKRAVQILLYVVESKSPLLRKLRAKNFISNIYGANQNGTVYFEVEVPFTVTDPDHGPLCQELDKVLSAVINAFGDYHLNENMEFVTKTEEGDDMVGFLNSCSFDWTNHEDEYNAKANYGFEYNWSSMG*