NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115546_1038912

Scaffold Ga0115546_1038912


Overview

Basic Information
Taxon OID3300009435 Open in IMG/M
Scaffold IDGa0115546_1038912 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100413
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1886
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041865Metagenome159N
F058439Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0115546_10389122F041865AGGAGMKRNEESYAKVKNKEMLTYRNQMGVSQVAMAKKLGLSHRMWNHYEHGTKQVPISVVLSAKYLCKNMDKMDELHDDIKQHEEPLTKWDVDRIEALMKKMKDDISANSQIVSKILAQSHKEMGFLLSKIN*
Ga0115546_10389124F058439N/AYFGSAIPLEILKDIGYRVSKNKDQFNSFLAPSRIDDGGYANQAMRRAGQQNGYFCKFPMAHNTIKNTELTWHKMKRVISVGGKFSAINLNHWDSKETVEFRSHGGTLEIDKIWSWMMFLSNMQKHSILNRHNQIQAVQDTPSYIGRSSRTRQSIAYSLMRRVGGATTQEIMDASGIQTAQRVRSMISEQIRPTLVNQFGRDILITHNQQHYNHRYSASQGRYDLNGYEIPLQVNNGSDGAVFANNGRTDLISGLDNQYKSNLKPFRN*
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