NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115562_1054955

Scaffold Ga0115562_1054955


Overview

Basic Information
Taxon OID3300009434 Open in IMG/M
Scaffold IDGa0115562_1054955 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1743
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094095Metagenome / Metatranscriptome106N
F101486Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0115562_10549551F101486N/AMQFQVQSTGDYTRLPAHASAYFNRISVEVGGQTISAFENANVLDEILRNNLQIEVDPVNEHSTIQRKNDPFSATAITGPETYPDDDTKAFFSIDLGTLARSIQPSIVAMMMLPQVTITLHLAENAVCVSPSNITTLALFKTAAS
Ga0115562_10549552F094095N/ALTHKDYGSIGDVATEFATKIKETLDPIQGTGGFEAITSQTPADRQSTGQTGKRSFSMSITSAAEFLTISNIRIQFPQYRNTNNPTDFNDSYVLLGGKRVTNANDTNTASIKATVDGNTLSFQGAFPMVLQTQPYMYLSLNVANDNLQTANLGNINAAIDEHVTSSCFLAKVPVQNEYCGIQLDESTPYFMTTSQRTVTELLFQCLDGHGREFPFIDDVGDGADIETQGNLFSDMVIRHEVMDIGEDGNVLDAPFKTYNYQLNSVGTPQLIGGSGF*
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