Scaffold Ga0115005_10046767

Overview

Basic Information

• Taxon OID: 3300009432
• Scaffold ID: Ga0115005_10046767
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3319
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 79.0225
  • Long. (^o): -9.5247
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004712	Metagenome / Metatranscriptome	427	Y
F066802	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115005_100467672	F004712	AGGA	MSSHDPILITTSQAPDAKPVAVNKILTTTPAIIIDVPEYEVPELVFGGSTTVEPGVGEIISPLILCNVTAATVTVNVRVFRWASVAGTGIYYFILKNFPVPAGDTIPIPLNGQFLGTGDKLEVDCSVDYAVHSTLSFTLGQAEEDDVV*
Ga0115005_100467673	F066802	N/A	FIDINLTRRDARNLLTAVYNDFAYDKFNPTVTAPTYSDNGSQNAVRTYTASFFNFDGTHVFPVFNPSDSTLGLKYKGSVNAYSDLANLTGMKPKWSYIVATDYATNFYAGDIYYWNGSTWVGAGTNNTDLLDAFTGAWSRMKTYINTNLSPDVEHQNMVTGLFDDCLKDNVLRPETLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGQAISAIASVLNEDGGRIRWSGADELNNQYFARGLRINGRTGRIEGRPFTSSVRKLARRASNSRAVV*