Scaffold Ga0114938_1070787

Overview

Basic Information

• Taxon OID: 3300009430
• Scaffold ID: Ga0114938_1070787
• Source Dataset Name: Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1286
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Ash Meadows Big Spring, Nevada
• Coordinates
  • Lat. (^o): 36.37
  • Long. (^o): -116.27
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027557	Metagenome	194	Y
F036770	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114938_10707873	F027557	N/A	LIPHGANTVERLLRWLDDVDDFLAVTWLQAGPVALTVVLLVLFLAVVGAAFVLGPPDLLAAP*
Ga0114938_10707874	F036770	N/A	DRVRQQPGRGSRQAVITKALGSVSSYKNWADKARGAFDDSK*