Scaffold Ga0114915_1013263

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1013263
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3094
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F027845	Metagenome / Metatranscriptome	193	Y
F039623	Metagenome / Metatranscriptome	163	N
F103244	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_10132633	F001728	N/A	MNKFELRPTDKKDHFRFFANGVDLVGEQEKSIFRHMVQVMDNGINTGL*
Ga0114915_10132634	F103244	N/A	MRVEDITSYENEKSKVTIFMESDTDGSYHFLKHIEEKGSDNEQIIRYSLPMFMAEYYMVEKFIKGNLVQDRKFFKQVMNLKANRNE*
Ga0114915_10132635	F027845	AGAAG	MTQQEIIEAVKDIHAEVDHEGVDIVYNSGVYDIDVRFTSWDCLFTIEVYSKVEEVPLAILPKAMTTLFDYTVDLHTEYMRNISELRDTQDYLDIYYK*
Ga0114915_10132636	F039623	AGG	MELLDVDNTIKFRKFKCLTTNQVYEIIQTECTGRYLINAIDTLTRSDGLRKSFTRMELKKRFSNVEGIPEKDYLTKKKKKR*