Scaffold Ga0114915_1003125

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1003125
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6833
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015795	Metagenome	252	Y
F075345	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_100312510	F015795	GAGG	MGRTNDLYMMMRLAYEQAVDDYNNKKTDSVLKSYKKYHIINVGMGSYDPQNELMNFYNEDNSLDSII*
Ga0114915_10031259	F075345	AGGAG	MSKKEVTISDIIDEVVNYTNPSKEDLEKQIEQDKINYHIWQCGVAIKELQLAVDELAVKNKEAS*