Scaffold Ga0114997_10098661

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10098661
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1787
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F014465	Metagenome	263	Y
F024648	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_100986615	F024648	GGA	MCEYHLYPGDMFRTKAGLGLIVKKSGGYFTYSTVASDQKKACQTIETKRFYSYCDDMSHGQVLEVILLPNRKYRRKRK*
Ga0114997_100986616	F005524	GAG	MNIGDKVQHFGTGSIGTVIDSSYEVESTFQQMCVQWEDDKALHRDSWERPESLSIIPHIPYDFTFTD*
Ga0114997_100986618	F014465	AGGA	MKTRGMIMIGALVRDCSKIMKIVTGYKCSQRGEYVQFAGDHETAWYPLDGFEILSMED*