Scaffold Ga0114998

Basic Information
Taxon OID	3300009422 Open in IMG/M
Scaffold ID	Ga0114998_10000055 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009422 Open in IMG/M

Scaffold ID

Ga0114998_10000055 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60826
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (67.95%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

60826

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (67.95%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009243	Metagenome / Metatranscriptome	321	Y
F019396	Metagenome	230	Y
F026261	Metagenome / Metatranscriptome	198	Y
F048972	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114998_1000005513	F009243	N/A	MNTNFEYYYNNVPGKGLCRNNLIYTSLIDNNKKQFCQWYYNDTDYHKGHNQVVDPNLMDEKFEREIKFLSIMRKEYPQHIPAYTVDYEWRKIYLEIDGPDMWELAGCNTNDYTSVLPDWDIQMLEIIQAHKDLGLYKYSMHPSSYFIVDGKLKSMNYFFTYDNNDVNISLRSVMSHISEDRQADLFPKMETMGIDVDAPTNHNAIQQLAFESFKTNFRDDVMEKAKQIYA*
Ga0114998_1000005518	F048972	AGG	MKNLGVCDTIDWNNVIAQCASVDPEFVGPSHKRGDTIPGLDPILDMWEQAGYKTVHEGGTAGWDMFMPGKQFDQSVADAWNKFYGLKCENIWISRVWPGRFAPIHWDVHDDEVNLPDCPRYHSHIGEPQWGHIFIADEEIFYNQPQGTTWEWTDRKIWHAGTNCGLVPKYIWNAW*
Ga0114998_1000005519	F026261	AGGA	MAKLVGLTENIIDWDPIVDLCANCTTGDYNSVKTVVDRSEGNWRENPELLGSYHDVIDTWDNAGYNLDEIEWWDYYPGDHFDIDIQNKFAKIIDAEPLRVFVSDVRPGTNVPYHWDVEDKEEEWLALGELKRWVCFMDKPRWGNVLILEDQAFHNIAQGEIWEWDSYRSHHAGTSCGIHHQYLFHFLGRPNK*
Ga0114998_1000005520	F019396	AGGA	MKIWKPYLKISEEGYPCMAQQTYEPLVSSDGTTFCKNYDVDSEYQKMEGKDRPLYTKEVVDWFFQNELTYLELFKDKPYAPEVKDIDYKNQKIYLKWYGKSCNQVIYDKQSEGWPEYMWRQQIRDIMVDQYDEGIYKLTMYPHCHYIDNHRQMRAIDWYGCVPIDDPYIELKYMDGIIHDTAQFRLDETGAPIDDKVNLEIMFKRSLSTHVLWGDENMSYIHKEIFGDG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114998_10000055

Overview

Ecosystem & Geography

Associated Families

Sequences