Scaffold Ga0114994_10174162

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10174162
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1454
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058457	Metagenome	135	N
F081770	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_101741623	F058457	AGGAG	MNKVDLMGVKDKNAFSDALKTTQQGDIINYHVGQYAGGLFKHDALMAAEARLVNLAQKKLGTGLFQYIAQRTKKKLKK*
Ga0114994_101741624	F081770	AGGAGG	MENGGLNPFQESELKYLRRQVDTLQEVEHRRDAHPNAKQDLWVAREELDRFVRNLRAQGVNI*