Scaffold Ga0114994_10048884

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10048884
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2924
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022284	Metagenome	215	Y
F053386	Metagenome	141	N
F075435	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100488841	F053386	AGGAG	MYKETINDHMTAVGDVSSMFIVIEYNNPTYPETTVYNIAHGADLRLGDGKPNMLSDVYDGTILVEYDNLKDAQKMCQRLNYGYESTKRLIATGSIA*
Ga0114994_100488844	F022284	AGGAG	MKNSYQGYWFSCETTYSDDIGTRKWTLLLINKSNGKINTIGLNDQMTMGEVLKLAYEEIEKLNTEEKK*
Ga0114994_100488848	F075435	N/A	MKTFTVIGRVWTRDHGYLATRLSMDFEAKNKTRAIKMARDLRNAGEGFASCNNFVAYPTDCPEENPLAMSWEERQMERDYWKQEERYSDDPPIVPQGYYD*