Scaffold Ga0114994_10017617

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10017617
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5046
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008915	Metagenome / Metatranscriptome	326	Y
F015659	Metagenome	253	Y
F058519	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100176173	F015659	GGA	MKERTLQDAIKEFRNNIADSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTDSTELANGSHKFKANIYIDEKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQVKEVVKAKPIVKLVPKAKVNIEELANDWIEVLKKTAETSNSLSNYEKNLNVLRKEYISDLHQIYTDLVQQQRIDSAYISLQQTITNRKI*
Ga0114994_100176175	F058519	N/A	MLVIGYMTFALKIIADSYQKFNITNTSVSACKNPPHIRCFQKHYLTKEQNSKCSNASLTLGTIGHDIVEKAIVENLTIAECIQDKKIQDKINSYISFDKKDQMKFEFGIKNLEAIGNNHLENLKELPKQKWKTEAEHMKWIDPINVPFRMFIDLTGETHVNDIKNKFPSVKYSPLKTKQLKTNENRIGDWVCSHPRIDQRAFTTDLMQIALYSHTTGLKPSLSYASATDRILFTEDNCDELKPENLKLWLQELIAYEIAWEKKLIAANGSLEELMWLCVPDFSDIRKKSFWYQGVPEEYIKGYLNFYV*
Ga0114994_100176179	F008915	GAG	MESSNITLDLYEMQSAAHLGILRCLESEKYKEKWGYNYKGSFNDKMAKSISGSLGEAAVAKFLNIKFTFTCNHGGDADLIFKDLKIQVRTQLPKNNNSLIIRPKAKPGEFYILVIDEAPIFKILGFVNSTHVLGTEKFLTDFGLDRPPCYSLPPEKLTPIFLLKNGTWN*