Basic Information | |
---|---|
Taxon OID | 3300009420 Open in IMG/M |
Scaffold ID | Ga0114994_10002315 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 13897 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (75.76%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 67 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005591 | Metagenome / Metatranscriptome | 395 | Y |
F015812 | Metagenome / Metatranscriptome | 252 | Y |
F029428 | Metagenome / Metatranscriptome | 188 | Y |
F031261 | Metagenome | 183 | Y |
F051470 | Metagenome | 144 | N |
F068823 | Metagenome | 124 | N |
F077786 | Metagenome | 117 | Y |
F102056 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114994_1000231513 | F102056 | GGAG | MNKEFEKELVELLNKYYNTNWDYVWEFIGDTIETNLWLGEEVSDDV* |
Ga0114994_1000231514 | F077786 | AGGAGG | MMNKETYTYEVSEQSTDTRYFEIMSNRKLTEEEIHNAICMPDIQKEWDCVKEGGITATFKWTDFGEDSDMEIDSGEVSDE* |
Ga0114994_1000231515 | F031261 | AGGAG | MRTKTYVMTVEKNSDEVLEQLNKLQQVKQSVSLMNRHSNRKHYVKCQGRWGRNNPNYFKGGCSGHSFCSLQNAVRWDVYIYQGGE* |
Ga0114994_1000231516 | F068823 | GGAGG | MSRTYNTYYFEKLDVMDKLDEIGLLTRLLRIVYKEQGLETIKYLVCSKTNRKFDWFNDEMMTDIISDIEEGVSYEN* |
Ga0114994_1000231517 | F051470 | AGGAG | MSNDNKWIHEYYDERWEHYFETLRKDIKDIGQVEAMADRMAMEDVYNLDMEG* |
Ga0114994_1000231529 | F029428 | AGG | MAQIGSDEKPVTFRKSIYGKSNGGKGARPRPGFYTQQYKDNWDLIFGKKGEDNAKNEKE* |
Ga0114994_100023154 | F005591 | N/A | MFECWLSLKSDPSILKPEGCMNLYFTSTTLDKEIEWTWTDMDKAYWNTWTPKKSDIKIVTRLNKEQKNQALDELWEDLQSSIQFTKDRNNARRREKRVASKK* |
Ga0114994_100023158 | F015812 | GAGG | MSKTLYKRIDEICAREYVVNKLSVNKYRTFVDLLYDDLISWDNPLDVSEIDIIHRIHEHLSVMVSSSLVYPPIGTNHT* |
⦗Top⦘ |