NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10002315

Scaffold Ga0114994_10002315


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10002315 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13897
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005591Metagenome / Metatranscriptome395Y
F015812Metagenome / Metatranscriptome252Y
F029428Metagenome / Metatranscriptome188Y
F031261Metagenome183Y
F051470Metagenome144N
F068823Metagenome124N
F077786Metagenome117Y
F102056Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114994_1000231513F102056GGAGMNKEFEKELVELLNKYYNTNWDYVWEFIGDTIETNLWLGEEVSDDV*
Ga0114994_1000231514F077786AGGAGGMMNKETYTYEVSEQSTDTRYFEIMSNRKLTEEEIHNAICMPDIQKEWDCVKEGGITATFKWTDFGEDSDMEIDSGEVSDE*
Ga0114994_1000231515F031261AGGAGMRTKTYVMTVEKNSDEVLEQLNKLQQVKQSVSLMNRHSNRKHYVKCQGRWGRNNPNYFKGGCSGHSFCSLQNAVRWDVYIYQGGE*
Ga0114994_1000231516F068823GGAGGMSRTYNTYYFEKLDVMDKLDEIGLLTRLLRIVYKEQGLETIKYLVCSKTNRKFDWFNDEMMTDIISDIEEGVSYEN*
Ga0114994_1000231517F051470AGGAGMSNDNKWIHEYYDERWEHYFETLRKDIKDIGQVEAMADRMAMEDVYNLDMEG*
Ga0114994_1000231529F029428AGGMAQIGSDEKPVTFRKSIYGKSNGGKGARPRPGFYTQQYKDNWDLIFGKKGEDNAKNEKE*
Ga0114994_100023154F005591N/AMFECWLSLKSDPSILKPEGCMNLYFTSTTLDKEIEWTWTDMDKAYWNTWTPKKSDIKIVTRLNKEQKNQALDELWEDLQSSIQFTKDRNNARRREKRVASKK*
Ga0114994_100023158F015812GAGGMSKTLYKRIDEICAREYVVNKLSVNKYRTFVDLLYDDLISWDNPLDVSEIDIIHRIHEHLSVMVSSSLVYPPIGTNHT*

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