Scaffold Ga0114994_10000087

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10000087
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47884
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (79.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003074	Metagenome / Metatranscriptome	509	Y
F042008	Metagenome / Metatranscriptome	159	Y
F051478	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1000008730	F051478	AGG	MSKYEKTVKVLEGPWEADTFPQGEETTDVLSRKTITTYVQDGYLCESTTTREYRGDDYFDTSSNKRILKVNV*
Ga0114994_1000008737	F003074	AGGA	MKTTEEKLLQFVNFSPSERWMERIVEMHPMRQIFWATIMQVSVFGFMMLSFSIINFSLEMGL*
Ga0114994_100000875	F042008	AGGA	MATQNKFVIEYGLKVGTADVIDSSGKLAAAALSTLDTDSLSEGSSNLYYADSKVQTLLSSSTSKTLVNVGIDGGTI*