Scaffold Ga0114982_1026553

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1026553
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1897
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003863	Metagenome	464	Y
F029678	Metagenome	187	Y
F040479	Metagenome	161	Y
F066578	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_10265531	F066578	N/A	GVFSFDLMDVPEPEWLNHWMPATTEFTRSNKVSKLVGYLPIEEAVQL*
Ga0114982_10265533	F040479	GGA	VNPASTTWLAQETLRANQEAQLMELLSSLENVVANLNYKSFEVYDTLCTAIETVSAVLSDTQIESAGTE*
Ga0114982_10265534	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANAVPEVAGRTDYDRADESDDGGEA*
Ga0114982_10265537	F029678	N/A	NGRVEYYPQARERVMNRVTGFTIFNKETGQKLATLPLTIPIGATVEAYERDGQSVGWGWEESNE*