Scaffold Ga0114982_1004415

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1004415
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5579
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017484	Metagenome / Metatranscriptome	240	Y
F021757	Metagenome	217	Y
F045756	Metagenome	152	Y
F084234	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100441513	F017484	AGGAG	MSIEIFRMDTTGAGWVDIENATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCANHKNVKGAIYFD*
Ga0114982_100441518	F084234	AGGCGG	MVDWFTNPFSVFFDWVGYFLIFGAVVTMILVIGAVVAIPLGLKLLGVAFAKTIVIETSKVVRDLGIANIDIKQTKEIQNLKNYYARTVTPILSRVSDKKIS*
Ga0114982_10044152	F021757	AGGTGG	MMTRKDYVAVAEIISSYKDLIGDEFLFEDLVEDFSSFFAEDNPNFKFDKFREACMK*
Ga0114982_10044157	F045756	AGGA	MTKYNVLISYVVEAEDELRAVFALNKLLLSTSENEIAKFDAFHIEEVQ*