Scaffold Ga0114982_1003851

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1003851
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6061
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F017998	Metagenome	237	Y
F038234	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100385110	F001754	N/A	MSNNPRFEVVVSFKDFMGKPHNIVCNNRRKLAEANEFLKMFKTESVKIAQILGEYPVVMGMYPKKYHSEIKRELASAGFSAVSKFLLK*
Ga0114982_10038512	F038234	N/A	MLTIKNIDELTGHYIGHWKIHYVTNSKDNYLIKVVHNGSPFDMFNLSIGRVKTSNGDYLMYCQETGNRHYLPIESIGDRDVFLRFLIDELI*
Ga0114982_10038513	F017998	N/A	MNLERLDLEKYEVLEQERNRTTADPLYQQWMKGLGVSSSYTDREGIIRANDINNQYDYSNLNGNKSAKTGIVYSVISLFK*