Scaffold Ga0114982

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1002205 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009419 Open in IMG/M

Scaffold ID

Ga0114982_1002205 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8686
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8686

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (70.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F009462	Metagenome / Metatranscriptome	317	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100220512	F003080	N/A	MTTAKDLTDQLINRAKNLKEFVVERDFNRIPAGVVKFDIQHTVGQTAKLFVPALTQDEAEQMVDEWFEDDV*
Ga0114982_100220514	F002977	GGA	MQPQSPAEGILKTNEWGDSKVYRVVCECTDSMHDHNVWVEADEHEISITIYATVRSNFWSKTRWYHMWSLLTKGYVDTETTLVMRKQGALNYAETLKSAIIDVEEFRKEKNVKN*
Ga0114982_10022052	F026795	AGGA	MAKNYKDVNYFETRPDIVKIFDDLEAYLDWCRLEMAPFDESHLYNRESWAWRNFEKRNRPKKPWNGERKPYLGTKPQYNRNQ*
Ga0114982_10022055	F043407	GGA	MSTISTNTISTINPGYGAVPPGGVGLSPLTIGQVYTTNNTNGAFLTSNGINGTSWTNTNEVMRINQTNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVILEKKHPKLKKLYDEYITALGKYRTFEAIKGDDNGTT*
Ga0114982_10022056	F009462	AGGAG	MELHESIRDTYKEVVIKNDIGFRLTLKKHEVISPKGLFSIDMVQESLKTDGTVSDSQTYNFFMTSEELQKLASGLTV*
Ga0114982_10022058	F026556	GGAGG	MTSALIKLIFGIALIVIAIAIGPLLGIWSLNTLFPALNIPFNIETWAAFAILLGGASGIRYKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114982_1002205

Overview

Ecosystem & Geography

Associated Families

Sequences