NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114982_1000558

Scaffold Ga0114982_1000558


Overview

Basic Information
Taxon OID3300009419 Open in IMG/M
Scaffold IDGa0114982_1000558 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19827
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (80.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000376Metagenome / Metatranscriptome1216Y
F000671Metagenome / Metatranscriptome945Y
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F037227Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0114982_100055813F001176GAGMSDDGTGMVTPPNSEPSGAVTSQEVGRKKPSQGKFHSGPRPPTKIDRNKHGIRRETTFGPKKTKPKKV*
Ga0114982_100055814F001280AGGAGMCIECGCESVGSESGIANIPGGILDTSRDGEAGLTLNMTATPEQRESFINE*
Ga0114982_100055822F037227AGGMANNQVTVLEGIIEDISIELYQKLWNAIPAEEQNEESSKAIGLNSKETTLFIIQRFMDKFNAAAEELKDK*
Ga0114982_100055827F002060N/AMTIDPISLIIPICTALLGGVGASLLSGRREYKKEQIRQKEREQDHLKIELKDLKLALYKLERDLTEWKDKYYGAIQELISVKSELEETLIKLTFIDHKIDDMNRLD*
Ga0114982_100055828F000671AGGAMEKILCYSCNKSKNKLNVRKSALLPINLLMCESCISGKLEPRWVLILSGRQNGSDSVKEFIIKKKYLGQEITAAELLV*
Ga0114982_100055834F003582N/AMNNYRIKIEVDAEVQAFSENDAVDYVNDIFGIDEEIKNIKVVSVKEK*
Ga0114982_100055844F000376AGGAMSEYQDRAKECKCCGKHVPLPTVLKEYNGIVMCPTTFANVVEYKRIWKNLGVRPQGNVRKHFSEYVQQIVEQTIDKNEDGSLQ*

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