Basic Information | |
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Taxon OID | 3300009419 Open in IMG/M |
Scaffold ID | Ga0114982_1000558 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19827 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (80.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000376 | Metagenome / Metatranscriptome | 1216 | Y |
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F001176 | Metagenome / Metatranscriptome | 756 | Y |
F001280 | Metagenome / Metatranscriptome | 732 | Y |
F002060 | Metagenome / Metatranscriptome | 597 | Y |
F003582 | Metagenome / Metatranscriptome | 478 | Y |
F037227 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114982_100055813 | F001176 | GAG | MSDDGTGMVTPPNSEPSGAVTSQEVGRKKPSQGKFHSGPRPPTKIDRNKHGIRRETTFGPKKTKPKKV* |
Ga0114982_100055814 | F001280 | AGGAG | MCIECGCESVGSESGIANIPGGILDTSRDGEAGLTLNMTATPEQRESFINE* |
Ga0114982_100055822 | F037227 | AGG | MANNQVTVLEGIIEDISIELYQKLWNAIPAEEQNEESSKAIGLNSKETTLFIIQRFMDKFNAAAEELKDK* |
Ga0114982_100055827 | F002060 | N/A | MTIDPISLIIPICTALLGGVGASLLSGRREYKKEQIRQKEREQDHLKIELKDLKLALYKLERDLTEWKDKYYGAIQELISVKSELEETLIKLTFIDHKIDDMNRLD* |
Ga0114982_100055828 | F000671 | AGGA | MEKILCYSCNKSKNKLNVRKSALLPINLLMCESCISGKLEPRWVLILSGRQNGSDSVKEFIIKKKYLGQEITAAELLV* |
Ga0114982_100055834 | F003582 | N/A | MNNYRIKIEVDAEVQAFSENDAVDYVNDIFGIDEEIKNIKVVSVKEK* |
Ga0114982_100055844 | F000376 | AGGA | MSEYQDRAKECKCCGKHVPLPTVLKEYNGIVMCPTTFANVVEYKRIWKNLGVRPQGNVRKHFSEYVQQIVEQTIDKNEDGSLQ* |
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