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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009419 Open in IMG/M |
| Scaffold ID | Ga0114982_1000004 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 136870 |
| Total Scaffold Genes | 200 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 140 (70.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001443 | Metagenome / Metatranscriptome | 693 | Y |
| F002869 | Metagenome / Metatranscriptome | 524 | Y |
| F007163 | Metagenome / Metatranscriptome | 356 | Y |
| F048947 | Metagenome | 147 | Y |
| F103236 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114982_100000420 | F007163 | GAGG | MTLEDLQHIFDRQIEEGTEKLYFMLVDGAAMPEILRHPAEDLEKLLPMLSSFQYVGSPAGIPRFTK* |
| Ga0114982_100000421 | F002869 | GAGG | MTNEITTEMLDRKIAWCEQNAFWGRGSDVQRMQDFYFEKTRTSVTEDWPEAFTLQELADTLGIEQVRYRIYYSQDNLTCRLFVFRPRCTYSEEQKMLAMGFVPAKDGDTENIPDHPVEEVNNE* |
| Ga0114982_100000441 | F048947 | N/A | MNSAQTRRHRRAFRQLEHSVLIDAKKHRDAGAWCQQQFGKRWEAIGKNTDGAWCMFWAGRDNHDKYIFHFVEERDKLIFTLKWL* |
| Ga0114982_100000453 | F103236 | N/A | MIYINVGLSNPWGRPFANLWNRSGLITDHLAWEAELLQTRTLIGFEFSYTRRQSHAGLTLELAVFGHSISFQIYDTRHWNHVTGAWEVHL* |
| Ga0114982_100000472 | F001443 | N/A | MPMYEAVVRTPEGEKKQRVWAPDMKTARHLLEQEYGIKNVPYQPKIVPN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |