Scaffold Ga0114909_1021660

Overview

Basic Information

• Taxon OID: 3300009414
• Scaffold ID: Ga0114909_1021660
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2095
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F025299	Metagenome / Metatranscriptome	202	N
F030781	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114909_10216601	F002150	N/A	MMVSVAVPTMLATKAGKKSGQVLQEQFGYNFVDLITKLVLFYVISFLIAKYMEAVIYFQGGLSTVAGFFGIKLVQSDQLPNQWVSLFVDTDQKTYSATPTAQSKFNPPGWDKPYDYGTPEHQQAEPHLFPQKDQQFKFWDLINAIAIFYISWEAYKYWKKAEYLKKINLSDGVDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK*
Ga0114909_10216602	F025299	GGA	MIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKSKVRRSERKAKEANSMEDEMDKYLNNIPAITQHLEIELMNVKEKGATPEQCKSLESKLDLARKAQQYEMPIRMLGKPILKKVLTIIDKFGV*
Ga0114909_10216604	F030781	N/A	YVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSATTRFIMGVGYTKQG*