Scaffold Ga0114909_1004796

Overview

Basic Information

• Taxon OID: 3300009414
• Scaffold ID: Ga0114909_1004796
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5605
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022779	Metagenome	213	Y
F065211	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114909_100479612	F022779	AGAAG	MAGKRKTTAKKKAVPIVKNTISAEEKTSRLEVLRNAPIAMPKSVMEARRKQASKLGTGEITGRPTGYIPETIEAMLKNVRCGLPVQRAAVMAGVGKSTLYRWAEQYSDFRDAIEQAESEYQAFALGTVNDGIANGDGHLAMKLLGARFSDEYATSKKVDVRSTHIRSSISADQLSGLQSARLGSDIVSAANAIETEQVAALPEKVTQASPENDDSAENDPGEPPTTRGQEPNPPPRLK
Ga0114909_10047964	F065211	GGTGG	MHQSGGVFDRLSSTGRNLSGLTAQKKDKMIIQESSSGGGELPPKKPQSAVCVGVIDVGEAYGIPPGPDGRRLVPSTNPNFPDSKQKVRFVFESEEKMEDGRAFQLSRQFNVSMSDKGYLLPFLSGWGIKLVKTEAGIDLEASCVGKVAMVNVTHDPDRSDPERTWANISTAMPSDTPVEPSGEFNKSEYMKKTGEKYAERQSGGSPY*