Scaffold Ga0114902_1072770

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114902_1072770

Scaffold Ga0114902_1072770

Overview

Basic Information
Taxon OID	3300009413 Open in IMG/M
Scaffold ID	Ga0114902_1072770 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	952
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	6.37	Alt. (m)		Depth (m)	2851
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081212	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_10727704	F081212	N/A	LSCVEFDPPFEREKFENEWWEIQGYSLCFNFHESGDLLSYQDQVLEEDEWGQFVDEGEWTFHTPNEYSVIDKSIFIYENEECWEIEEYYDNKIITACECTLLNIGE*

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