Scaffold Ga0114902_1049851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114902_1049851

Scaffold Ga0114902_1049851

Overview

Basic Information
Taxon OID	3300009413 Open in IMG/M
Scaffold ID	Ga0114902_1049851 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1218
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	6.37	Alt. (m)		Depth (m)	2851
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002445	Metagenome	558	Y
F025008	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_10498512	F025008	AGGA	MIKYILIMKICSAVHGDCLPDYNAGTFNTWFDCAANGTINTGSAMAEIGPDLVNSNKIYVTFKCKQANET*
Ga0114902_10498514	F002445	N/A	MSTDKKICPECKGNGYLRTEMNTIVQCLNCWSEGEIDEKIWARNYDPIIPDELQ

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