Scaffold Ga0114902_1037533

Overview

Basic Information

• Taxon OID: 3300009413
• Scaffold ID: Ga0114902_1037533
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1462
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F054107	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_10375331	F054107	N/A	YLIRNAKFTEMDKMVKEKRKIHSEKVEPKVNAAAGNFVQAVQTGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLANTPPQEVPGSEAERNQPMTKGDFFQVIKDGIQLLRQQTAAPDPRIERAIDMQDKLVDAMWEKMARALISDKDAAPGVN*
Ga0114902_10375334	F040140	GGAG	MLSCKLSMPKFGKKFEDTGYDGSHHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKAQYPKDLDFALKHIVWSKKQLEPGLKCELC*