Scaffold Ga0114902_1026597

Overview

Basic Information

• Taxon OID: 3300009413
• Scaffold ID: Ga0114902_1026597
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1815
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055656	Metagenome	138	Y
F081887	Metagenome	114	Y
F082712	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_10265972	F081887	GGA	MRIKKNTICYTSELGHNNFWYPTNNKVLVKEACEAYPVSWISGGRKTPIRILKAYLIPLDITEDTTNNISPPTKNQYTVVWLEK*
Ga0114902_10265974	F082712	N/A	MDPSKENNKKWEKVGIFNNYIDANELRCVLLDNDDTGLLKVKVHRCGPEGSQFKVKRHFPKPFIKKGKKYDNTP*
Ga0114902_10265975	F055656	N/A	LCIFGYFTYSFIQYRKREKYRTQELNHRVQCMLDEMERDYQASLLQEEEPVTNIFREHVIEEISRHRLVYDEKTGRYVKLRQIE*